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Kirsch, Ilan R.

https://orcid.org/0000-0001-5592-5201

Mayo Clinic

Adaptive Biotechnologies (United States)

Citations 14

Gene Expression Differences in Normal Esophageal Mucosa Associated with Regression and Progression of Mild and Moderate Squamous Dysplasia in a High-Risk Chinese Population
Joshi, Nina, Johnson, Laura Lee , Wei, Wenqiang , Abnet, Christian C. , Dong, Zhiwei , Hawk, Ernest T. , Qiao, You‐Lin , Taylor, Philip R. , Limburg, Paul J. , Dawsey, Sanford M. , Kirsch, Ilan R. , Abnet, Christian C

Cancer Research | July 6, 2006 | Volume: 66 | Issue: 13 | Pages: 6851-6860

10.1158/0008-5472.can-06-0662 Get It

AbstractA randomized, double-blinded, placebo-controlled 2 × 2 factorial chemoprevention trial was conducted in Linxian, China to assess the effects of selenomethionine and celecoxib on the natural history of esophageal squamous dysplasia. Results from this study indicated that asymptomatic adults with mild dysplasia were more likely to show an improvement when treated with selenomethionine compared with placebo (P = 0.02). Prompted by this finding, we examined the molecular profiles associated with regression and progression of dysplastic lesions in normal mucosa from 29 individuals, a subset of the Linxian cohort, using the Affymetrix U133A chip. Twenty differentially expressed genes were associated with regression and 129 were associated with progression when we compared the change in gene expression over time. Genes associated with immune response (n = 15), cell cycle (n = 15), metabolism (n = 15), calcium transport or calcium ion activity (n = 10), regulation of transcription (n = 9), signal transduction (n = 7), cytoskeleton and microtubules (n = 5), nucleotide processing and biosynthesis (n = 4), G-coupled signaling (n = 4), and apoptosis (n = 3) were present in the list of 149 genes. Using the Expression Analysis Systematic Explorer pathway analysis program, only the immune response pathway was significantly overrepresented among these 149 genes. Individuals whose lesions regressed seemed to have higher expression of genes associated with immune stimulation, such as antigen presentation, survival of T cells, and T-cell activation (HLA-DRA, HLA-DPA1, HLA-DBQ1, CD58, and FCER1A). In contrast, individuals whose lesions progressed had higher expression of genes involved in immune suppression and inflammation (CNR2, NFATC4, NFRKB, MBP, INHBB, CMKLR1, CRP, ORMS, SERPINA7, and SERPINA1). These data suggest that local and systemic immune responses may influence the natural history of esophageal squamous dysplasia. (Cancer Res 2006; 66(13): 6851-60)
Selenomethionine Treatment Does Not Alter Gene Expression in Normal Squamous Esophageal Mucosa in a High-Risk Chinese Population
Joshi, Nina, Johnson, Laura Lee , Wei, Wenqiang , Abnet, Christian C. , Dong, Zhi-Wei, Hawk, Ernest T. , Qiao, You‐Lin , Taylor, Philip R. , Limburg, Paul J. , Dawsey, Sanford M. , Kirsch, Ilan R. , Abnet, Christian C

Cancer Epidemiology, Biomarkers & Prevention | May 15, 2006 | Volume: 15 | Issue: 5 | Pages: 1046-1047

10.1158/1055-9965.epi-06-0135 Get It

Abstract Selenium is a promising cancer chemoprevention agent. A recent randomized controlled chemoprevention trial found that selenomethionine (SeMet) supplementation for 10 months favorably effected a change in esophageal dysplasia grade among participants who started the trial with mild dysplasia. To further explore the role of SeMet in this trial, we compared gene expression profiles by treatment group using Affymetrix HU 133A chips in before/after supplementation paired normal esophageal biopsies from a subset of 29 trial participants, 16 who received SeMet, and 13 who received placebo. Using P < 0.001 as a cutoff, 11 differentially expressed genes were found in the SeMet supplementation group but these genes did not include either known selenoprotein genes or genes previously shown to be modulated by selenium treatment. Because the number of differentially expressed genes (n = 11) was less than expected by chance (n = 18), we concluded that SeMet supplementation had no measurable effect on gene expression in the normal squamous esophagus of these subjects with dysplasia. (Cancer Epidemiol Biomarkers Prev 2006;15(5):1046-7)
Genetics and Cytogenetics of Multiple Myeloma
Fonseca, Rafaël , Barlogie, Bart , Bataille, Régis, Bastard, Christian, Bergsagel, P. Leif , Chesi, Marta , Davies, Faith E. , Drach, Johannes, Greipp, Philip R., Kuehl, W. Michael, Hernández‐Rivas, Jesús María , Minvielle, Stéphane , Pilarski, Linda M., Shaughnessy, John D. , Stewart, A. Keith, Avet‐Loiseau, Hervé , Bergsagel, P. Leif , Kirsch, Ilan R. , Davies, Faith E , Fonseca, Rafael

Cancer Research | September 20, 2005 | Volume: 64 | Issue: 4 | Pages: 1546-1558

10.1158/0008-5472.can-03-2876 Get It

Abstract Much has been learned regarding the biology and clinical implications of genetic abnormalities in multiple myeloma. Because of recent advances in the field, an International Workshop was held in Paris in February of 2003. This summary describes the consensus recommendations arising from that meeting with special emphasis on novel genetic observations. For instance, it is increasingly clear that translocations involving the immunoglobulin heavy-chain locus are important for the pathogenesis of one-half of patients. As a corollary, it also clear that the remaining patients, lacking IgH translocations, have hyperdiploidy as the hallmark of their disease. Several important genetic markers are associated with a shortened survival such as chromosome 13 monosomy, hypodiploidy, and others. The events leading the transformation of the monoclonal gammopathy of undetermined significance (MGUS) to myeloma are still unclear. One of the few differential genetic lesions between myeloma and MGUS is the presence of ras mutations in the latter. Gene expression platforms are capable of detecting many of the genetic aberrations found in the clonal cells of myeloma. Areas in need of further study were identified. The study of the genetic aberrations will likely form the platform for targeted therapy for the disease.
Diverse karyotypic abnormalities of the c -myc locus associated with c -myc dysregulation and tumor progression in multiple myeloma
Shou, Yaping, Gabrea, Ana, Brents, Leslie A., Roschke, Anna V. , Dewald, Gordon W., Bergsagel, P. Leif , Kuehl, W. Michael, Martelli, Marialuisa , Ying, Qi , Kirsch, Ilan R. , Bergsagel, P. Leif

Proceedings of the National Academy of Sciences | July 26, 2002 | Volume: 97 | Issue: 1 | Pages: 228-233

10.1073/pnas.97.1.228 Get It

Translocations involving c -myc and an Ig locus have been reported rarely in human multiple myeloma (MM). Using specific fluorescence in situ hybridization probes, we show complex karyotypic abnormalities of the c -myc or L -myc locus in 19 of 20 MM cell lines and approximately 50% of advanced primary MM tumors. These abnormalities include unusual and complex translocations and insertions that often juxtapose myc with an IgH or IgL locus. For two advanced primary MM tumors, some tumor cells contain a karyotypic abnormality of the c -myc locus, whereas other tumor cells do not, indicating that this karyotypic abnormality of c -myc occurs as a late event. All informative MM cell lines show monoallelic expression of c -myc . For Burkitt's lymphoma and mouse plasmacytoma tumors, balanced translocation that juxtaposes c -myc with one of the Ig loci is an early, invariant event that is mediated by B cell-specific DNA modification mechanisms. By contrast, for MM, dysregulation of c -myc apparently is caused principally by complex genomic rearrangements that occur during late stages of MM progression and do not involve B cell-specific DNA modification mechanisms.