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Naddaf, Elie

0000-0001-6212-1236

Mayo Clinic

Department of Neurology, Mayo Clinic, Rochester, MN 55905, USA.

Citations 48

Artificial intelligence models using F-wave responses predict amyotrophic lateral sclerosis
Martinez‐Thompson, Jennifer M. , Cantu, Carolina Parra, Naddaf, Elie , Gogineni, Venkatsampath, Botha, Hugo , Jones, David T. , Laughlin, Ruple S. , Barnard, Leland R , Staff, Nathan P. , Mazurek, Kevin A , Naddaf, Elie , Botha, Hugo , Jones, David T , Staff, Nathan P , Mazurek, Kevin A.

Brain | January 16, 2025 | Volume: 148 | Issue: 7 | Pages: 2320-2330

10.1093/brain/awaf014 Get It

Abstract Nerve conduction F-wave studies contain crucial information about subclinical motor dysfunction that can be used to diagnose patients with amyotrophic lateral sclerosis (ALS). However, F-wave responses are highly variable in morphology, making waveform interpretation challenging. Artificial intelligence techniques can extract time–frequency features to provide new insights into ALS diagnosis and prognosis. A retrospective analysis was performed on F-wave responses from 46 802 patients. Discrete wavelet transforms were applied to time-series waveform responses after stimulating ulnar, median, fibular and tibial nerves. Wavelet coefficient statistics, onset age, sex and body mass index were features for training a Gradient Boosting Machine model on 40 095 patients (5329 diagnosed with motor neuron disease). Model performance was tested on responses from 689 ALS patients meeting Gold Coast criteria and 689 age- and sex-matched controls. An exploratory analysis examined model performance on cohorts of patients with inclusion body myositis, cervical radiculopathy, lumbar radiculopathy or peripheral neuropathy, which can mimic ALS symptoms. Factors affecting survival were estimated through Cox proportional hazards regression. The model trained using wavelet features on the full waveform had 90% recall, 87% precision and 88% accuracy. Similar model performance was measured using features from only the M-wave or F-wave. Classification probabilities for ALS patients were statistically different from the diagnoses mimicking ALS symptoms (P < 0.001, ANOVA, Tukey’s post hoc test). Higher model classification probabilities of ALS, older age at onset, and family history of ALS alone or with frontotemporal dementia were factors decreasing survival. Longer diagnostic delay and upper limb onset site were factors increasing survival. Model scores two standard deviations below the mean had 4 months increased survival (two standard deviations below had 3 months decreased survival). Artificial intelligence techniques extracted important information from F-wave responses to estimate a patient’s likelihood of ALS and their survival risks. Although the model can make predictions at a specific decision threshold as presented here, the true strength of such a model lies in its ability to provide probabilities about whether a patient is likely to have ALS in comparison to other mimicking diagnoses, such as inclusion body myositis, cervical or lumbar radiculopathy or peripheral neuropathy. These probabilities provide clinicians with additional information that they can use to make the final diagnosis with greater confidence and precision. Integrating such a model into the clinical workflow could help clinicians to diagnose ALS sooner and manage treatment based on estimated survival, which might improve outcomes and the quality of life of patients.
NLRP3 Inflammasome Activation and Altered Mitophagy Are Key Pathways in Inclusion Body Myositis
Naddaf, Elie , Nguyen, Thi Kim Oanh , Gao, Huanyao , Hou, Xu , Fiesel, Fabienne C. , Mandrekar, Jay , Kokesh, Eileen, Harmsen, William S. , Fiesel, Fabienne C , Naddaf, Elie , Watzlawik, Jens O. , Hou, Xu , Kokesh, Eileen, Lanza, Ian R. , Springer, Wolfdieter , Trushina, Eugenia

Journal of Cachexia, Sarcopenia and Muscle | December 26, 2024 | Volume: 16 | Issue: 1 | Pages: No page available

10.1002/jcsm.13672 Get It

ABSTRACT Background Inclusion body myositis (IBM) is the most prevalent muscle disease in adults for which no current treatment exists. The pathogenesis of IBM remains poorly defined. In this study, we aimed to explore the interplay between inflammation and mitochondrial dysfunction in IBM. Methods The study population consisted of 38 IBM patients and 22 age‐ and sex‐matched controls without a myopathy. Mean age was 62.9 years (SD = 9) in IBM group and 59.7 (10) in controls. Bulk RNA sequencing, Meso Scale Discovery electrochemiluminescence (ECL), western blotting, histochemistry and immunohistochemistry were performed on frozen muscle samples from the study participants. Results We demonstrated activation of the NLRP3 inflammasome in IBM muscle samples, with the NLRP3 inflammasome being the most upregulated pathway on RNA sequencing, along with increased expression of NLRP3 and ASC proteins in IBM group. NLRP3 RNA levels most strongly correlated with TLR7 (correlation coefficient ρ = 0.91) and complement activation‐related genes, and inversely correlated with several mitochondria‐related genes among others. On muscle histopathology, there was increased NRLP3 immunoreactivity in both inflammatory cells and muscle fibres. Mitophagy is critical for removing damaged mitochondria and preventing the formation of a vicious cycle of mitochondrial dysfunction—NLRP3 inflammasome activation. Herein, we showed altered mitophagy, as witnessed by the elevated levels of p‐S65‐Ubiquitin, a mitophagy marker, in muscle lysates from IBM patients compared to controls (median of 114.3 vs. 81.25 ECL units, p = 0.005). The p‐S65‐Ubiquitin levels were most significantly elevated in IBM males compared to male controls (136 vs. 83.5 ECL units; p = 0.013), whereas IBM females had milder nonsignificant elevation compared to female controls (97.25 vs. 69 ECL units, p = 0.31). On muscle histopathology, p‐S65‐Ubiquitin aggregates accumulated in muscle fibres that were mostly Type 2 and devoid of cytochrome‐c‐oxidase reactivity. NLRP3 RNA levels correlated with p‐S65‐Ubiquitin levels in both sexes (males: ρ = 0.48, females: ρ = 0.54) but with loss of muscle strength, as reflected by the manual motor test score, only in males (males: ρ = 0.62, females: ρ = −0.14). Lastly, we identified sex‐specific molecular pathways in IBM. Females had upregulation of pathways related to response to stress, which could conceivably offset some of the pathomechanisms of IBM, while males had upregulation of pathways related to cell adhesion and migration. Conclusions There is activation of the NLRP3 inflammasome in IBM, along with altered mitophagy, particularly in males, which is of potential therapeutic significance. These findings suggest sex‐specific mechanisms in IBM that warrant further investigation.
Vasculitic Myopathy
Pinto, Marcus Vinícius , Soontrapa, Pannathat , Naddaf, Elie , Pinto, Marcus V , Soontrapa, Pannathat , Naddaf, Elie , Warrington, Kenneth J. , Koster, Matthew J.

Neurology | November 25, 2024 | Volume: 103 | Issue: 12 | Pages: No page available

10.1212/wnl.0000000000210141 Get It

Filamin C-Associated Nemaline Myopathy
Shammas, Ibrahim , Alhammad, Reem , Naddaf, Elie , Naddaf, Elie

Neurology | April 24, 2024 | Volume: 102 | Issue: 10 | Pages: No page available

10.1212/wnl.0000000000209477 Get It

Mitochondrial myopathies diagnosed in adulthood: clinico-genetic spectrum and long-term outcomes
Beecher, Grayson , Gavrilova, Ralitza H. , Mandrekar, Jay , Naddaf, Elie , Naddaf, Elie , Beecher, Grayson

Brain Communications | February 12, 2024 | Volume: 6 | Issue: 2 | Pages: No page available

10.1093/braincomms/fcae041 Get It

Abstract Mitochondrial myopathies are frequently recognized in childhood as part of a broader multisystem disorder and often overlooked in adulthood. Herein, we describe the phenotypic and genotypic spectrum and long-term outcomes of mitochondrial myopathies diagnosed in adulthood, focusing on neuromuscular features, electrodiagnostic and myopathological findings and survival. We performed a retrospective chart review of adult patients diagnosed with mitochondrial myopathy at Mayo Clinic (2005–21). We identified 94 patients. Median time from symptom onset to diagnosis was 11 years (interquartile range 4–21 years). Median age at diagnosis was 48 years (32–63 years). Primary genetic defects were identified in mitochondrial DNA in 48 patients (10 with single large deletion, 38 with point mutations) and nuclear DNA in 29. Five patients had multiple mitochondrial DNA deletions or depletion without nuclear DNA variants. Twelve patients had histopathological features of mitochondrial myopathy without molecular diagnosis. The most common phenotypes included multisystem disorder (n = 30); mitochondrial encephalomyopathy, lactic acidosis and stroke-like episodes (14); limb myopathy (13); chronic progressive external ophthalmoplegia (12); and chronic progressive external ophthalmoplegia-plus (12). Isolated skeletal muscle manifestations occurred in 27%. Sixty-nine per cent had CNS and 21% had cardiac involvement. Mutations most frequently involved MT-TL1 (27) and POLG (17); however, a wide spectrum of established and novel molecular defects, with overlapping phenotypes, was identified. Electrodiagnostic studies identified myopathy (77%), fibrillation potentials (27%) and axonal peripheral neuropathy (42%, most common with nuclear DNA variants). Among 42 muscle biopsies available, median percentage counts were highest for cytochrome C oxidase negative fibres (5.1%) then ragged blue (1.4%) and ragged red fibres (0.5%). Skeletal muscle weakness was mild and slowly progressive (decline in strength summated score of 0.01/year). Median time to gait assistance was 5.5 years from diagnosis and 17 years from symptom onset. Thirty patients died, with median survival of 33.4 years from symptom onset and 10.9 years from diagnosis. Median age at death was 55 years. Cardiac involvement was associated with increased mortality [hazard ratio 2.36 (1.05, 5.29)]. There was no difference in survival based on genotype or phenotype. Despite the wide phenotypic and genotypic spectrum, mitochondrial myopathies in adults share similar features with slowly progressive limb weakness, contrasting with common multiorgan involvement and high mortality.
A second case of liraglutide-type localised amyloidosis
Muhammad, Sara, Tobin, W. Oliver , Dasari, Surendra , Theis, Jason D. , Vrana, Julie A., Naddaf, Elie , Tobin, W Oliver , Theis, Jason, Naddaf, Elie , McPhail, Ellen Darcy

Amyloid | December 8, 2022 | Volume: 30 | Issue: 2 | Pages: 244-245

10.1080/13506129.2022.2151889 Get It

Granulomatosis with polyangiitis presenting as obstructive uropathy and vasculitic myopathy
Kimbrough, Bradly A. , Naddaf, Elie , Warrington, Kenneth J. , Jiménez, Rafael E. , Naddaf, Elie , Warrington, Kenneth J , Koster, Matthew J.

Rheumatology | September 2, 2022 | Volume: 62 | Issue: 4 | Pages: e136-e137

10.1093/rheumatology/keac506 Get It

Atypical presentations of inclusion body myositis: Clinical characteristics and long‐term outcomes
Alamr, Mazen , Pinto, Marcus Vinícius , Naddaf, Elie , Pinto, Marcus V , Naddaf, Elie

Muscle & Nerve | September 2, 2022 | Volume: 66 | Issue: 6 | Pages: 686-693

10.1002/mus.27716 Get It

AbstractIntroductions/AimsInclusion body myositis (IBM) typically presents with progressive weakness preferentially involving finger flexors and quadriceps. Atypical presentations have been less commonly reported. Here, we aim to describe the clinical characteristics and long‐term outcomes of IBM patients with atypical presentations.MethodsWe retrospectively searched the Mayo Clinic medical records to identify IBM patients with atypical disease onset, seen between 2015 and 2020.ResultsWe identified 357 IBM patients, of whom 50 (14%) had an atypical presentation. Thirty‐eight patients were diagnosed with IBM because they fulfilled one of the European Neuromuscular Center diagnostic categories at a later stage, 10 had all IBM histopathological features, and 2 were diagnosed on the basis of clinical and laboratory data. The most common presentation was dysphagia (50%), followed by asymptomatic hyperCKemia (24%; CK, creatine kinase), then foot drop (12%). 6% of patients presented with proximal arm weakness, 4% with axial weakness and 4% with facial diplegia. Median time from symptom onset to diagnosis was 9 y. Median age at diagnosis was 70.5 y. 16% of patients needed a walking aid. When tested, 86.5% of patients had impaired swallowing and 56% had elevated cytosolic nucleotidase‐1A antibodies. Only 1/26 patients who received immunotherapy had minimal improvement. Upon follow‐up, most patients had generalization of their weakness with a decline in their strength summated score of 0.082/mo.DiscussionA significant proportion of IBM patients may have an atypical presentation. Recognition of such heterogeneity could improve early diagnosis, prevent unnecessary immunotherapy, and provide insight for future diagnostic criteria development and clinical trials.
Comment on: Survival and associated comorbidities in inclusion body myositis: Reply
Naddaf, Elie , Naddaf, Elie

Rheumatology | July 4, 2022 | Volume: 61 | Issue: 11 | Pages: e348-e349

10.1093/rheumatology/keac379 Get It